PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.106960.1
Common NameCsa_4G050120, WRKY26
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 270aa    MW: 30306.7 Da    PI: 6.6269
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.106960.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68e-31139197259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D + WrKYGqK++kgs++prsYYrC+s+ gC+++k+vers +dp+v+++tY+ eHnh 
  Cucsa.106960.1 139 SDSWGWRKYGQKPIKGSPYPRSYYRCSSSkGCSARKQVERSLSDPEVFIVTYTAEHNHA 197
                     79*************************998****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-31124199IPR003657WRKY domain
PROSITE profilePS5081132.363133199IPR003657WRKY domain
SuperFamilySSF1182904.05E-26136199IPR003657WRKY domain
SMARTSM007741.7E-35138198IPR003657WRKY domain
PfamPF031063.8E-26140196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEDWGLQAIV KGCNGIPIGS STTAATTRLM EDSNWYSFLR SDQEEDEFFS SCVYNSSYNN  60
PQISSSSIFH DEFEGLFGRN SSNNSAAASI SHLLRDFKEP ADQKLHHKNQ IIQPTKQKQS  120
KKSRQNRVVK EVKADKVCSD SWGWRKYGQK PIKGSPYPRS YYRCSSSKGC SARKQVERSL  180
SDPEVFIVTY TAEHNHAEPT RRNALAGTTR KKFPALENPN LDMILSPNNS TSVASIEEDQ  240
HPMEGVTDGE VLIDMPFEFF TGLEDLLFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-181401991977Probable WRKY transcription factor 4
2ayd_A9e-191371991374WRKY transcription factor 1
2lex_A1e-181401991977Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840250.0GU984025.1 Cucumis sativus WRKY protein (WRKY26) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267532.10.0WRKY transcription factor 22-like
TrEMBLE7CEX40.0E7CEX4_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-31WRKY family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Ling J, et al.
    Genome-wide analysis of WRKY gene family in Cucumis sativus.
    BMC Genomics, 2011. 12: p. 471
    [PMID:21955985]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]